The Group for Research and Protection of the Fauna and Flora of the Indian Ocean Islands is a multidisciplinary structure based on the Indian Ocean islands (Madagascar, Mayotte, Comoros).

Through our works, we mobilize knowledge of ecology, population dynamics, biogeography, population genetics, phylogeography but also social sciences. 

Our scientific papers

Habitat fragmentation increases genetic distance between fruit bat subpopulations

Abstract
Livingstone's fruit bat (Pteropus livingstonii) is among the most threatened bats worldwide. As the species is an important pollinator and seed disperser of Comoros plants with a crucial role in forest regeneration, it is critical to understand how human-induced habitat disturbance impacts genetic structure at fine spatial scales in order to define conservation strategies. In this study, we assessed the level of genetic structure between eight colonies of the species and found that this was strong genetic structures between roosts that can be explained by isolation due both to distance and habitat fragmentation. Mitigation measures should aim to restore population connectivity.

 

Résumé
La chauve-souris frugivore de Livingstone (Pteropus livingstonii) est l’une des chauvessouris les plus menacées au monde. L’espèce étant un important pollinisateur et disperseur de graines des plantes des Comores et jouant un rôle crucial dans la régénération des forêts, la compréhension de l’impact des perturbations de l’habitat induites par l’homme sur la structure génétique à des échelles spatiales fines est essentielle pour définir des stratégies de conservation. Dans cette étude, le niveau de structure génétique de huit colonies de l’espèce a été évalué et nous avons constaté qu’il existait une forte structure génétique entre les perchoirs, pouvant s’expliquer par l’isolement dû à la fois à la distance et à la fragmentation de l’habitat. Les mesuresvisant à atténuer les effets de la pollution devraient avoir pour objectif de rétablir la connectivité entre les populations.

Citation:

Ibouroi, M. T., Arnal, V., Montgelard, C., & Besnard, A. (2024). Habitat fragmentation increases genetic distance between fruit bat subpopulations. African Journal of Ecology, 62, e13261. https://doi.org/10.1111/aje.1326

Habitat Suitability and Population Size Estimates for the Mongoose Lemurs (Eulemur mongoz) of Madagascar and the Comoro Islands, and Implications for Their Conservation

Mohamed Thani Ibouroi, Said Ali Ousseni Dhurham and Clément Rabarivola

Abstract

Tropical forests face an alarming rate of loss driven by anthropogenic pressures, exposing forest-dwelling species such as primates to extinction risks. Assessing population density and habitat selection by these species can provide insights into how they respond to habitat fragmentation and inform efective conservation. We investigated the population density and size of the mongoose lemur (Eulemur mongoz), a Critically Endangered primate species from Madagascar and the Comoro Islands using (1) conventional distance sampling, and (2) density surface modeling. We also used species distribution modeling to assess the habitat suitability and geographic distribution of the species in the two regions. We conducted surveys in Anjouan and Moheli, Comoros Islands (October–December 2017, February–April 2018 and May–July 2019), and Northwest Madagascar (October and December 2012). We estimated a mean population density of 23.49 individuals/km2
along 89.90 km of line transects for the Comoros population, and 15.23 individuals/km2 along 65 km of transects for the Madagascar population. We estimated a population size of 9128 individuals in Comoros and 7270 individuals in Madagascar. According to our species distribution model, mongoose lemurs have a relativelylarge geographic range in Comoros (336 km2, ~47% of the total area of Anjouan and Moheli, which is 714 km2) extending over low-elevation farmlands and in forests, while the Madagascar population is restricted to the remaining natural forests (3160 km2, ~17.5% of the total area studied, which is 18,000 km2). However, high levels of hunting (Madagascar only), habitat disturbance, and conversion of natural forest into agricultural lands render the species critically endangered to extinction. As population density and the distribution of primates are highly related to the habitat quality and vegetation availability and since the high level of habitat disturbance and lemur hunting
(in Madagascar) are associated with high levels of poverty, we suggest (1) enhancing livelihoods and well-being of rural communities, which will allow them to be less dependent on natural resources and reduce unsustainable natural resource use, (2) involving a broad community of local individuals and entities in conservation and management, and (3) restoring forests and avoiding the conversion of secondary forest into agricultural lands. Our fndings highlight how population density and distribution patterns are related to environmental factors. They also emphasize how species distribution modeling approaches are useful for primate conservation.

Citation:

Ibouroi MT, Dhurham S.A.O. Rabarivola Clément 2022. Habitat suitability and population size estimates for the mongoose lemurs (Eulemur mongoz) of Madagascar and the Comoro Islands and implications for their conservation. International Journal of Primatology. DO: https://doi.org/10.1007/s10764-022-00318-7

 

Understanding Drivers of Unsustainable Natural Resource Use in the Comoro Islands

Mohamed Thani Ibouroi, Said Ali Ousseni Dhurham, Aurelien Besnard  and Nicolas Lescureux: Tropical Conservation Science

Abstract

The Comoros archipelago is a biodiversity hotspot by virtue of its high level of endemism. However, it suffers one of the highest rates of forest loss worldwide, mainly due to strong anthropogenic pressures. As Comorian populations depend on forest resources for subsistence, establishing relevant conservation strategies for their sustainable management requires the consideration of multiple stakeholders’ perspectives toward biodiversity and habitat conservation. To better understand the relationships between humans and nature; how comorian people use natural resource and the relevance of a protected area for long-term biodiversity conservation, we used Q-methodology to assess local people’s perceptions regarding biodiversity and conservation actions. Three discourses are identified during analysis: “Pro-environment discourse”, “Keeping things as usual” and “Social and environmental concerns”. According to the results, employed respondents, were favorable to longterm forest and biodiversity conservation. In contrast, unemployed respondents were in favor of more immediate benefits while unemployed but educated respondents were in favor to both long-term forest conservation and immediate benefits from forests. This suggests that poverty and a lack of access to basic services is associated with overharvesting of natural resources by rural people. These results suggest that biodiversity conservation of the Comoros archipelagos may benefit for plan aiming at (1) developing tourism and maintaining sustainable production of crops and livestock that could allow enhancing livelihoods and well-being of all social groups, (2) developing projects such as local markets that could allow villagers to sell agricultural productions, (3) setting up awareness campaign for tree-planting and reforestation. Reforestation could allow re-establishing natural plants and make large trees available for long-term purposes.

Citation

Ibouroi M.T., Dhurham S.A.O., Besnard A., Lescureux N. 2021. Understanding Drivers of Unsustainable Natural Resource Use in the Comoro Islands. Tropical Conservation Science, 0, 1-22. DOI: 10.1177/19400829211032585

 

Noninvasive genetic sampling for flying foxes: a valuable method for monitoring demographic parameters

Mohamed Thani Ibouroi, Véronique Arnal, Ali Cheha, Said Ali Ousseni Dhurham, Claudine Montgelard, Aurélien Besnard: ECOSPHERE

Abstract.

Establishing effective wildlife conservation measures requires accurate demographic information such as population size and survival probability: parameters that can be extremely difficult to obtain. This is especially the case for threatened species, which are often rare and sometimes occupy inaccessible areas. While noninvasive genetic sampling (NIGS) techniques are promising tools for providing demographic data, these methods may be unreliable in certain situations. For instance, fecal samples of frugivorous species in tropical areas degrade rapidly, affecting the usability of the genetic material. In this study, we compared (1) NIGS capture–mark–recapture (NIGS-CMR) with conventional CMR to determine their potential in estimating demographic parameters of fruit bats, and (2) the precision of these demographic parameters and the associated costs given varying sampling designs through simulations. Using Livingstone’s fruit bats (Pteropus livingstonii) fecal samples, microsatellite markers were tested and genotyping success and error rates were assessed. The average genotyping success rate was 77%, and the total genotyping error rate for all loci was low (allelic dropout rate = 0.089, false alleles rate = 0.018). Our results suggested that five loci were required to identify individuals. Simulations showed that monitoring the species over a 9-yr period with a recapture rate of 0.20 or over a 6-yr period with a recapture rate of 0.30 seems appropriate to obtain valuable demographic parameters. Overall, in comparison to conventional CMR, NIGS-CMR offers a better method for estimating demographic parameters and subsequently for conducting long-term population monitoring in flying foxes due to the fact that (1) sample collection is easy and the level of genotyping errors in the laboratory is low and (2) it is cheaper, less time-consuming, and less disturbing to individual animals. We strongly advocate an approach that couples a pilot study with simulations as done in this study in order to choose the most efficient monitoring method for a given species or context.

Citation

Ibouroi M.T Arnal, V., Cheha Ali, Dhurham S. A. O., Montgelard C., Besnard A. 2021. Noninvasive genetic sampling for flying foxes: a valuable method for monitoring demographic parameters. Ecosphere 00(00):e03327. 10.1002/ecs2.3327

The frst comprehensive survey of habitat suitability and population size for the endangered Grande Comoro Scops Owl (Otus pauliani): implications for its conservation

Mohamed Thani Ibouroi, Nassia Ali Hassane, Said Moindjié, Mouniati Ombade, Nassabia Mohamed, Mohamed Hamidou Saidou, Kassim Abderemane, Ali Cheha, Jules Chifard: Journal of Ornithology

Abstract


The Grande Comoro Scops Owl (Otus pauliani) is an endangered, rare and elusive owl species restricted to the Karthala  forest, Grande Comore. This scops owl species is listed among the most threatened animals of the Comoro archipelago. The  species is subjected to strong anthropogenic pressures causing a high rate of habitat loss. Little is known about the species’ population size, habitat suitability and geographic distribution, making the establishment of relevant conservation strategies difcult. In this study we assessed the population density and abundance of the species using the distance sampling approach through (1) the conventional distance sampling method (CDS), and (2) density surface modeling (DSM). Based on DSM, we applied a species distribution modeling method to investigate habitat suitability and geographic distribution of the species to close this knowledge gap. Average population density was estimated to be ca. 27 individuals km−2. We estimated a global population size of 3452 individuals. Our DSM suggested that the Grande Comoro Scops Owl has a very limited distribution (133 km2), restricted to high elevations in Grande Comore’s remaining natural forests (between 800 and 2000 m altitude). However, the currently high level of habitat disturbance and conversion of natural forest into agricultural land could render the species vulnerable to extinction. To ensure the viability of the species and the biodiversity of the Karthala forest, we suggest (1) restoring forest and securing corridors in the Karthala remnant forest; (2) avoiding the conversion of secondary forest into agricultural land, and using existing agroforestry for plantation development; (3) involving a broad community of local individuals and entities in their conservation and management.

Citation

Ibouroi M.T, Ali-Hassane N, Moindjié S, Ombade M, Mohamed N, Hamidou[1]Saidou M, Abderemane K, Ali Cheha A. 2019. The first comprehensive survey of habitat suitability and population size for the endangered Grande Comoro Scops Owl (Otus pauliani): implications for its conservation. Journal of Ornithology. 160:1121– 1132 https://doi.org/10.1007/s10336-019-01689-0

The contrasting genetic patterns of two sympatric flying fox species
from the Comoros and the implications for conservatio

Mohamed Thani Ibouroi, Ali Cheha, Veronique Arnal, Erwan Lagadec, Pablo Tortosa, Gildas Le Minter, Said Ali Ousseni Dhurham, Claudine Montgelard, Aurélien Besnard: Conservation Genetics

Pteropus livingstonii, (forêt Masakini, Anjouan), photo by Ibouroi

P. s. comorensis (Forêt Ouzini, Anjouan), photo by Ibouroi

Abstract
Pteropus livingstonii and Pteropus seychellensis comorensis are endemic fruit bat species that are among the most threatened animals in the Comoros archipelago. Both species are pollinators and seed dispersers of native and cultivated plants and are thus of crucial importance for the regeneration of natural forests as well as for cultivated plantations. However, these species are subject to strong anthropogenic pressures and face one of the highest rates of natural habitat loss reported worldwide. Yet little is known about the population genetic structure of these two species, making it difficult to define relevant conservation strategies. In this study, we investigated for the two flying fox species (1) the level of genetic diversity within islands, as well as across the archipelago and (2) the genetic structure between the two islands (Anjouan and Mohéli) for P. livingstonii and between the four islands of the archipelago (Anjouan, Mohéli, Grande Comore and Mayotte) for P. s. comorensis using mitochondrial and microsatellite markers. The results revealed contrasting patterns of genetic structure, with P. s. comorensis showing low genetic structure between islands, whereas P. livingstonii exhibited high levels of inter-island genetic differentiation. Overall, the genetic analyses showed low genetic diversity for both species. These contrasting genetic patterns may be the result of different dispersal patterns and the populations’ evolutionary histories. Our findings lead us to suggest that in terms of conservation strategy, the two populations of P. livingstonii (on Anjouan and Mohéli islands) should be considered as two separate management units. We recommend focusing conservation efforts on the Anjouan population, which is the largest, exhibits the highest genetic diversity, and suffers the greatest anthropogenic pressure. As for P. s. comorensis, its four populations could be considered as a single unit for conservation management purposes. For this species, we recommend protecting roosting trees to reduce population disturbance.

Citation:

Ibouroi, M. T., Cheha, A., Arnal, V., et al (2018). The contrasting genetic patterns of two sympatric fying fox species from the Comoros and the implications for conservation. Conservation Genetics, 19(6), 1425–1437. https://doi.org/10.1007/s10592-018-1111-6.

A habitat suitability analysis at multi‑spatial scale of two sympatric fying fox species reveals the urgent need for conservation action

Mohamed Thani Ibouroi, Ali Cheha, Guillelme Astruc, Said Ali Ousseni Dhurham, Aurélien Besnard: Biodiversity and Conservation

Abstract

In this study we used a multi-spatial scale approach to investigate habitat suitability, roosting characteristics, and ecological niche in two fying fox species on the Comoros Islands—Pteropus livingstonii and Pteropus seychellensis comorensis. At a broad scale, we assessed the ecological niche and habitat suitability for both species using the Species Distribution Modeling method based on the recent ensembles of small models (ESM) approach. At a fne scale, Ecological Niche Factor Analysis (ENFA) was applied to assess habitat selection by each species. Direct observation was used at each roost to estimate the total number of individuals and to identify the roost characteristics. At both broad and fne scales, the analyses highlighted clear niche partitioning by the two species. We found that P. livingstonii has a very limited distribution, restricted to steep, high-elevation slopes of the islands’ remaining natural forests, and the patterns were the same for roosting, foraging sites and the entire habitat. By contrast, P. s. comorensis has a relatively large geographic range that extends over low-elevation farmlands and villages and it was negatively correlated to natural forest across the entire area and all roosting sites, but its foraging areas were positively correlated to natural forest and high elevation areas. Both species selected large, tall trees for roosting. The total number of individuals in the studied area was estimated to be 1243 P. livingstonii and 11,898 P. s. comorensis. The results of our study demonstrated that these two species use diferent habitat types and ensure diferent ecosystem services in pollination and seed dispersion and thus are both critical for maintaining overall ecosystem dynamics. However, the currently high level of hunting pressure and roost disturbance makes them vulnerable to extinction. To ensure the viability of both species, conservation measures need to be taken by the Comoros government.

Ibouroi MT, Cheha A, Astruc G et al (2018) A habitat suitability analysis at multi-spatial scale of two sympatric flying fox species
reveals the urgent need for conservation action. Biodivers Conserv 27:2395–2423. https://doi.org/10.1007/s10531-018-1544-8

Pteropus livingstonii, (forêt Masakini, Anjouan), photo by Ibouroi